Change version number by incrementing by one rather than appending ".1".

Change bundle identifier to "com.mallinckrodt.APPNAME"

Name folder containing resigned IPA after the app rather than "SignedApp"
* Changed the way version numbers are incremented
* IPA file names include version number and bundle identifier
* Change CFBundleIdentifier to com.mallinckrodt.*
IPA naming and versioning

Name the IPA after the bundle ID and version number