Merge branch 'hotfix/fix_clavius' into develop

* hotfix/fix_clavius:
  Don't need debug anymore.
  Should fix it, needs to be POSIX compatible.
  More debug.
  Debug and dup argv for klp_matrix.
Merge branch 'hotfix/doc_update' into develop

* hotfix/doc_update:
  Formatting update.
You can print a matrix.

You can print a matrix. Or a pony. So long as the pony is in matrix format. The matrix is output in row-order. Unless it's a pony, then it's in oats-order.
Merge branch 'feature/output_transition_matrices' into develop

* feature/output_transition_matrices:
  You can print a matrix.