Belatedly bump version following citation updates etc
Add gilist, negative_gilist and seqidlist as advanced parameters to enable filtering by species or other subclasses.
Tweak -gilist help text and indentation
Mention GI and SeqID filters in release notes
Fix dependencies; Clear error if missing Biopython

Neglected to check in tool_dependencies.xml, might as well use
Biopython 1.64 now.
Check for duplicate ids before run makeblastdb

See issue #48 and similar workaround in the makeblastdb wrapper.
Tweak TravisCI config for Galaxy startup changes
Nate moved sample XML files under config/ (15 Sept 2014)
Disable async uploads under TravisCI

See https://bitbucket.org/galaxy/galaxy-central/commits/5238a1e029e9fa4f736ac2ab2ed260c559177d2a

Hopefully this will help with SQLite locking problems.
Don't bother with Twill-based testing on TravisCI.

Galaxy now defaults to the API based test framework, and the
older Twill-based framework seems to be a bit fragile now
(with what look like false positive failures).
Tweak blast_rbh.py docstring to point at README file / GitHub
Tweak README to clarify can use blast_rbh.py outside Galaxy
Package definition for new BLAST+ 2.2.30 release.

Simply copied the BLAST+ 2.2.29 tool_dependencies.xml and did a search/replace.
Update this README to include link to ToolShed
Update TravisCI to use new NCBI BLAST+ 2.2.30 release

Will find out which of the unit tests need to be updated...
Fix URL which was only partially updated
Belated update this for new API to blast_rbh.py
Update blast_rbh to use BLAST+ 2.2.30

Looks like something has changed in the TBLASTX qcovhsp values?
Update test output using BLAST+ 2.2.30

Note that updating test-data/deltablast_four_human_vs_rhodopsin.xml
will be more complicated...

$ deltablast -query rhodopsin_proteins.fasta -subject four_human_proteins.fasta -evalue 1e-08 -out deltablast_rhodopsin_vs_four_human.tabular -outfmt 6 -rpsdb /data/blastdb/ncbi/cdd/cdd_delta
BLAST engine error: /data/blastdb/ncbi/cdd/cdd_delta contains no frequency ratios needed for composition-based statistics.
Please disable composition-based statistics when searching against /data/blastdb/ncbi/cdd/cdd_delta.
Will bump wrapper versions for BLAST+ 2.2.30