Adding a method to output distance matrix to an infile for phylip. The built in neighbor joining method works great but it suffers from speed. The phylip package can output a newick tree rapidly. For large trees, the distance matrix is difficult to format for phylip.
changing parameters to output method
Fixing print to be compatible with python3.3
Fixed some typos
Forgot to add Saket to CONTRIB file (only in NEWS file so far)
Adding einfo.dtd, reported as GitHub issue #296

Downloaded http://eutils.ncbi.nlm.nih.gov/eutils/dtd/20130322/einfo.dtd
Fixed typo: RuntimeException --> RuntimeError
Remove Windows style new lines (suggested by @mgymrek)
Thank Melissa Gymrek for fastsimcoal work (GitHub #293)
fastsimcoal2 support (squashed commit from pull request #293)
Revert change which broke detecting simcaol2.exe on Windows
fixed cpairwise2 import issue under python3
Thank Chunlei Wu for cpairwise2 fix
SimCoal test removal
Simcoal deprecation
Simcoal deprecation
Explicit error from failed SFF assert in _check_eof
Add missing print-and-compare output for test_Fasttree_tool.py

Generated using FastTree 2.1.7 SSE3 on 64bit Linux.
Windows file system case insensitive; actually try docuemented path
Remove unused variable