[avocado-105] Upgrades to latest ADAM snapshot.
Merge pull request #105 from fnothaft/upgrade-to-refactor

[avocado-105] Upgrades to latest ADAM snapshot.
[avocado-107] Upgrade to ADAM 0.14.1-SNAPSHOT.
[avocado-106] Moves to appassembler packaging and adds submit scripts.
Merge pull request #107 from fnothaft/adam-0.14.1-snapshot

Move to ADAM 0.14.1 SNAPSHOT and appassembler packaging
[avocado-109] Fix serialization-based unit test failure.
Merge pull request #109 from fnothaft/serializer-fixes

[avocado-109] Fix serialization-based unit test failure.
[avocado-110] Fixing issues with logging and coverage check.
Merge pull request #110 from fnothaft/fix-logging

[avocado-110] Fixing issues with logging and coverage check.
[avocado-112] Fixing ADAM-prefixed dependencies.

Fixes #112, by updating the names of the ADAM-prefixed classes from the
adam repo that avocado depends on here.
Merge pull request #113 from tdanford/adam-prefixes

[avocado-112] Fixing ADAM-prefixed dependencies.
[avocado-98] Add somatic genotyper