Merge pull request #34 from raymond301/master

slight changes to graphs and protein id fix
Initial work on filtering the protein id views.
Changed the Swift front page.
Grid packet can display itself as qsub-like command for user convenience.
Dumping the failed work packets for easier future debugging.
New SQT combiner task.
Actually using the FailedJobManager.
Fixing the grid runner.
SqtMs2 combiner fixes.
Scaffold accepts .sqt files.
Scaffold accepts .sqt files.
Fixed javascript glitch.
Link to QuaMeter
Sqt cleaner seems to be functional.
Comet worker cleans up the sqt files.
Update description as soon as we change a task to include ms1
Double button removal.
Fixing QuaMeter db loading task.
Fixing the leaking log file descriptors.
Quameter metrics are listed in Java code.