Add Example code or writing Plate data to ome-tiff.
cmake: CompilerChecks: Correct standard warnings

If the -std options don't work for the compiler, issue a
warning, not an error.  The existing error was not using
a valid message type.
Add in-place caching attribute and constructor to Memoizer

For in-place caching, the current implementation of Memoizer requires to set
the directory as the root path. This is not intuitive and requires a priori
knowledge about the setId file especially on Windows platforms. This commit
proposes to store in-place caching as a boolean attribute which can override
directory.
Modify getMemoFile() logic to handle and check in-place caching
Expanded version to include multiple FOVS per well.
PGMReader.java: add ppm and pbm to list of acceptable file extensions.
Add logic to create temporary file in MemoizerTest.setUp
Extend Memoizer tests to cover directory existence/permissions cases
Merge pull request #1268 from MicronOxford/pgm-fixes

multiple netpbm fixes
Errors found during review see https://github.com/openmicroscopy/bioformats/pull/1252/
Merge pull request #1290 from rleigh-dundee/cmake-errormsg

cmake: CompilerChecks: Correct standard warnings
Removed white space.
merge develop -Dorg -Ssuccess-only: PR 1154 (Leica: prevent exception when linking EmissionFilter)
merge develop -Dorg -Ssuccess-only: PR 1252 (Add Example code or writing Plate data to ome-tiff.)
merge develop -Dorg -Ssuccess-only: PR 1279 (travis: Build with Oracle JDK 8)
merge develop -Dorg -Ssuccess-only: PR 1292 (Memoizer: improve usability of in-place caching)
merge develop -Dorg -Ssuccess-only

Repository: openmicroscopy/bioformats
Excluded PRs:
  # PR 1265 qidane 'New units' (label: exclude breaking)
  # PR 858 melissalinkert 'Initial support for Veeco AFM data' (label: exclude)
  # PR 1249 PremyslFiala 'ND2 - Bug fixes' (user: PremyslFiala)
  # PR 1161 sommerc 'Initial CellH5 Reader class' (user: sommerc)
  # PR 1054 qidane 'Additional annotation points throughout the model' (exclude comment)
  # PR 1015 qidane 'Messy binary' (exclude comment)
  # PR 1177 rleigh-dundee 'specification: Add metadata for HDF5 embedding' (exclude comment)
  # PR 1293 rleigh-dundee 'travis: Install and use GCC 4.8' (status: failure)
  # PR 857 melissalinkert 'Initial support for Zeiss .lms files' (label: exclude)
  # PR 816 melissalinkert 'Add support for multi-channel Volocity Clipping datasets' (label: exclude)
  # PR 1141 LeeKamentsky 'Reader for Amaris FlowSight .cif format' (label: exclude)
Updating b040244..e272c60
Previously merged:
  # PR 1290 rleigh-dundee 'cmake: CompilerChecks: Correct standard warnings'

Merged PRs:
  # PR 1154 melissalinkert 'Leica: prevent exception when linking EmissionFilter'
  # PR 1252 imunro 'Add Example code or writing Plate data to ome-tiff.'
  # PR 1279 rleigh-dundee 'travis: Build with Oracle JDK 8'
  # PR 1292 sbesson 'Memoizer: improve usability of in-place caching'

Generated by OME-5.1-merge-push#417 (http://ci.openmicroscopy.org/job/OME-5.1-merge-push/417/)
Update auto-generated documentation

Repository: snoopycrimecop/bioformats

Generated by BIOFORMATS-5.1-merge-docs-autogen#22 (http://ci.openmicroscopy.org/job/BIOFORMATS-5.1-merge-docs-autogen/22/)