Commit made by the Bioconductor Git-SVN bridge.
Consists of 3 commit(s).

Commit information:

    Commit id: ac4205f479827315cabfa4c2dfe8692b14a8fdef
    Commit message:
    update TODOS
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-02-05T13:28:41-08:00

    Commit id: e418855acc8017ab46da89ff931bad297c7b08ec
    Commit message:
    Change the sense of user messages

    so they are consistent with
    REQUIRED (not ERROR) and RECOMMENDED (not WARNING).
    Change associated functions and variables.
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-02-06T15:12:37-08:00

    Commit id: 1351d596da6ad51f39567889b242e6e93d1c6661
    Commit message:
    Merge branch 'maindev'
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-02-06T15:14:05-08:00

From: Bioconductor Git-SVN Bridge <bioc-sync@bioconductor.org>

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BiocCheck@86184 bc3139a8-67e5-0310-9ffc-ced21a209358