Fixes to Dsolve and to rate terms to correct bugs with running multiscale
models.



git-svn-id: svn+ssh://svn.code.sf.net/p/moose/code/moose/branches/async13@5763 d1858a74-f715-0410-99c9-c66fe9cce3d6
Lots of documentation updates, for the MOOSE cookbook.
Even the Clock.cpp changes are documentation related.



git-svn-id: svn+ssh://svn.code.sf.net/p/moose/code/moose/branches/async13@5764 d1858a74-f715-0410-99c9-c66fe9cce3d6
Now graphs are created under /model/modelName as policy and since automatic schedulingexists removing doUseClock/doSetClock

git-svn-id: svn+ssh://svn.code.sf.net/p/moose/code/moose/branches/async13@5765 d1858a74-f715-0410-99c9-c66fe9cce3d6
Fix to copy function, it was failing to assign the default schedule.
Various updates for snippets.



git-svn-id: svn+ssh://svn.code.sf.net/p/moose/code/moose/branches/async13@5766 d1858a74-f715-0410-99c9-c66fe9cce3d6
createRecordingTable function from default is moved to utils/DataTable.py file as this function is required while droping plot from qgraphicsScene to plotwidget

git-svn-id: svn+ssh://svn.code.sf.net/p/moose/code/moose/branches/async13@5767 d1858a74-f715-0410-99c9-c66fe9cce3d6
addition changes in kkit.py

git-svn-id: svn+ssh://svn.code.sf.net/p/moose/code/moose/branches/async13@5768 d1858a74-f715-0410-99c9-c66fe9cce3d6
Cleanup of moose docs.


git-svn-id: svn+ssh://svn.code.sf.net/p/moose/code/moose/branches/async13@5769 d1858a74-f715-0410-99c9-c66fe9cce3d6
Added a demo showing use of Table for storing data. Docs for hdfdemo more tutorial-like.


git-svn-id: svn+ssh://svn.code.sf.net/p/moose/code/moose/branches/async13@5770 d1858a74-f715-0410-99c9-c66fe9cce3d6
Further cleanup of data recording demos.


git-svn-id: svn+ssh://svn.code.sf.net/p/moose/code/moose/branches/async13@5771 d1858a74-f715-0410-99c9-c66fe9cce3d6
Added screenshot for squid demo in cookbook.


git-svn-id: svn+ssh://svn.code.sf.net/p/moose/code/moose/branches/async13@5772 d1858a74-f715-0410-99c9-c66fe9cce3d6
Substantial effort on cross-compartment reactions. Implemented code to
go through and zero out cross-compartment reactions if the voxel does not
have all the abutting compartments. Seems to work in the tests I have.
 


git-svn-id: svn+ssh://svn.code.sf.net/p/moose/code/moose/branches/async13@5773 d1858a74-f715-0410-99c9-c66fe9cce3d6
minor update in printtree function. Some moose elements are ghosts,
listed but nonexistent (like HHChannel.zGate) and they cause an
exception to be raised when one tries to convert them to moose
elements.


git-svn-id: svn+ssh://svn.code.sf.net/p/moose/code/moose/branches/async13@5774 d1858a74-f715-0410-99c9-c66fe9cce3d6
Minor cleanup for neuroml 1.8 demos. Moved model loading into main block.


git-svn-id: svn+ssh://svn.code.sf.net/p/moose/code/moose/branches/async13@5775 d1858a74-f715-0410-99c9-c66fe9cce3d6
Lots of documentation stuff. Fixed up the docs to include link to source 
file. Added a couple more documentation examples, for steady state and for
dose-responses.



git-svn-id: svn+ssh://svn.code.sf.net/p/moose/code/moose/branches/async13@5776 d1858a74-f715-0410-99c9-c66fe9cce3d6
More work on documentation and cleaning up code snippets.



git-svn-id: svn+ssh://svn.code.sf.net/p/moose/code/moose/branches/async13@5777 d1858a74-f715-0410-99c9-c66fe9cce3d6
some cleanup in laying out widget

git-svn-id: svn+ssh://svn.code.sf.net/p/moose/code/moose/branches/async13@5778 d1858a74-f715-0410-99c9-c66fe9cce3d6
Icon cleanup

git-svn-id: svn+ssh://svn.code.sf.net/p/moose/code/moose/branches/async13@5779 d1858a74-f715-0410-99c9-c66fe9cce3d6
missing Icon

git-svn-id: svn+ssh://svn.code.sf.net/p/moose/code/moose/branches/async13@5780 d1858a74-f715-0410-99c9-c66fe9cce3d6
Changes made to qgraphicsItem for drag and drop to plotwidget

git-svn-id: svn+ssh://svn.code.sf.net/p/moose/code/moose/branches/async13@5781 d1858a74-f715-0410-99c9-c66fe9cce3d6
basic item from the toolbar are drag and dropable for model Building

git-svn-id: svn+ssh://svn.code.sf.net/p/moose/code/moose/branches/async13@5782 d1858a74-f715-0410-99c9-c66fe9cce3d6