re-generate documentation
update README, Rbuildignore, add unlink to clean up nexml files made by manuscript.Rmd
moving manuscript from inst/doc/pubs to the more obvious, more semantic manuscripts/ dir
reorganizing into manuscripts
call library(methods) internally
remove pubs dir
updated README
update makefile to use R scripts rather than command line functions
add explicit version numbers to dependencies
try using deb binaries for dependencies
don't attempt to install binaries that aren't available
restrict geiger to 1 core
rebuild readme
edits, more work on intro, fixed some citations
updated documentation
support BibEntry in citation coercion
fix formatting of DESCRIPTION (no blank lines, goodness gracious)
missing space in version
update workflow for RStudio / rmarkdown
move tutorial make steps out of manuscript