Changed tip touch method when adding ethanol in Illumina SPRI protocol

Tip touch is now done on liquid surface instead of well wall to avoid
formation of droplets that will not be removed and interfere with elution
Added code for handling multiple input plates in dilution protocol (issues #5 and #8)
Corrected volume in TruSeq Nano size selection

- Corrected transfer volume from 1st to 2nd bind in size selection
- Removed fragmentation cleanup step
Changed tip handling in Nextera PCR protocols

- Use a single tipbox in Nextera PCR if in runset mode and columns < 9 or <12 if running
independently
- Use an Eppendorf plate for reagents in Nextera PCR if columns < 7
Merge branch 'master' of https://github.com/jgruselius/bravo-protocols
Minor fixes and additions to jgr_lib_v1304.js
Added ThruPLEX protocols to production branch
Removed initial purification from TruSeq Nano runset
Renamed jgr_lib_v1304.js to *v1404.js to better reflect dates
Attempt to fix issue #13 related to parsing LIMS files

The function used for parsing the CSV format generated in the normalization process should now be able to handle 0 volumes
Fixed #13: Parsing LIMS-generated dilution files with 0-volumes works
Transferred fix for #13 to production branch
Worked on #5, #8: All JS code in place

Necessary JavaScript is implemented but VWorks protocol still has some
issues with cycling labware
Fix some indentation
Renamed jgr_lib_v1405 to reflect that it is a future version
Added new version of jgr_lib script

This version handles dilutions differently: Buffer transfers are combined and processed before source transfers
Worked on #4, #8: Added new version of transfer_dilution VWorks protocol

This version does buffer transfers for all plates before starting with
samples. An error occurs when bringing in new tipboxes
Corrected reagent volume in TruSeq Nano PCR setup
Updated truseq_nano.js

Corrected reagent volume in PCR setup, re-structured code
Merge branch 'master' of https://github.com/jgruselius/bravo-protocols

Conflicts:
	Protocol Files/development/jgr/truseq_pcr-free/truseq_nano.js