Added the main offsets changed as highlighted by Ben.
Replaced the fstream seekg() with fseeko() for 64 bit offsets.
Changed many data structures required to implement LFS.
A few more types changes.
Fixed warning for debug version.
More data types and warnings silencing.
Compilable version for LFS.
Not confirmed yet, but most likely we will have to change these as well.
closer to a working 64-bit implementation.  this version is not there yet, but the old 32-bit mode seems fine after light testing, and several other problems with the 64-bit implementation have been fixed
Fixed issue with -e mode not printing DNA characters properly
more big fixes that enable big-index mode to work properly
a few more bug fixes that seem to finally allow big-index mode to work on small indexes properly both with and without --mm
 Added the 2 binaries types building option with 2 corresponding ebwt extensions for lfs and non-lfs.
 Silent the char subscript warning.
Fixed missing dot before index 3/4.
Changed assert to silent g++ warning.
Changed the wrapper to select the proper align binary.
Changed the large index extension and new binaries names.
Fixed the loading of large index into memory.
Fixed the loading of large index as we agreed.