[RNAdam-12] Adding plugin for Defuse.
Merge pull request #15 from fnothaft/plugin

Adding plugin for Defuse.
[RNAdam-35] Upgrades to ADAM 0.14.1-SNAPSHOT.
Merge pull request #36 from fnothaft/adam-0.14.1-snapshot

[RNAdam-35] Upgrades to ADAM 0.14.1-SNAPSHOT.
[RNAdam-19] Fixing ADAMRecord and ADAMContig references.

Updating the use of ADAMRecord to AlignmentRecord, and ADAMContig to Contig,
within the core Defuse classes and support models (ReadPair).