Fix regeneration of assemble images if input transform changed
Fixed sorting of crop box resulting in incorrect volume boundaries
Fixed converting string list of integers to single integer in assemble pipleine
Fixes to .cmd files
A few more fixes to batch file scripts
Removed unused variable
Split exporting assembled images into seperate pipeline from assemble.
Forgot to update CMP align script to export registered images using new ExportImages pipeline.
Fix for generatign stos files for levels that images have not been generated for.
Changed output directory of registered images to be consistent with past behavior
Revert "Changed output directory of registered images to be consistent with past behavior"

This reverts commit 57403a7d2e7ad7b0e2c6ed89fa9bc60d6ce8a3c1.
Test fixes
Tweak for GetOrCreateImage always returning a node even if the image isn't created.
Merge branch 'dev'

Conflicts:
	nornir_buildmanager/pipelinemanager.py