'directory' name changed to 'tempdir'
unnecesary function removed
Merge branch 'master' of ssh://gitolite@proxybioinf.comav.upv.es:2203/seq_crumbs
Merge branch 'master' of ssh://gitolite@proxybioinf.comav.upv.es:2203/seq_crumbs
trim_chimeras moved to trim module
trim_chimeras modified into the general structure of trimming tools. It
can run now in parallel
Now draw_mp_distance_distribution a max distance to be plotted can be
set
minor pep8 warnings fixed
now sampling in draw_mp_distance_distribution works, bu tonly for fastq
files. It should be modified to use read_seqs and write_seqs to store
sample in a tempfile.
option to draw mp distance distribution removed. Use draw_mp_distance
distribution instead
Trim_nextera_adapters implemented.
- It can use blast, but it does not trim well when the adaptor is not in
full length
- Or use cutadapt: bin for cutadapt is hardcoded. It should be included
in third party or in a different way
warning included to remind that cutadapt bin should be changed