Add additional status message and capture dirmove errors on purge.
Merge branch 'master' of ssh://git/srv/git/genome
Merge branch 'master' of ssh://git/srv/git/genome
Merge branch 'master' of ssh://git/srv/git/genome
initial commit
Lumpy test1
lumpy stage2 - runs with multiple libraries
Lumpy wrapper - removed read_params command
PE & SR command subroutines and tests added
Changed the sam-bam converter to picard tools
Lumpy fixed mean and stdev subroutine
added a subtest to test the absence of split reads in the bam_file
changed mean and stdv to a hash
updated and improved pe_cmd_arrangement & its test
rearranged the sr parameters to see if they would work
Parameters and the histo files were put in a hash
added a Matched samples test
Changed some of the print statements to debug
DV2 lumpy: mean and stdev temp file storage
DB2 lumpy made methods to find lumpy scripts