added files for nojekyll use
made bump larger
added labels and format
added format to document
added informative title
added better formatting and title
Started code for model based simulation in cluster

added 'Simulation_SimRevision2' as template
updated git ignore

updated git ignore for ignoring zip files
moved seeds out of loop

very important bug fix
added code for generating model-based data

added code for generating mediators and outcomes from models. Added code
for tracking the intercept in the outcome model (d2)
updates

- added flexibility in specifying number of basis, order and
penalization lambda
- Got rid of 'Z'
- Added calculation of time for bootstrapping 50
-Added plot to check on results
Removed time tracking
changed initial simulation title to simulation4

copied code to have simulation1
eliminated effect of X on M and M on Y
finalized code for simulation 1
updated simulation 2
copied basic code for simulation 3
corrected simulation 1

to have a mediator that is only random error
updated function to restore par$mfrow
finished code for 4 simulations

For now, we will skip the confounding simulation. For that one, I need
to update the code for fMediation_ML