Added function for next_seq_id
Add dependency install of Data::Dump and configuration include for volvox-paired.bam
Robert confirmed that Data::Dump was not needed so removing from setup
Added multi_segment_next_segment_strand convinience method to simplify comparison of reads in pair
Added volvox-paired SNPcoverage test track
Added filters for unmapped reads that have mapped-mate coordinate
Updated colour scheme for multi-segment sequencing
	all-mapped f/r		: light red/blue
	all-mapped-proper f/r	: original red/blue
	next seg unmapped f/r	: hard red/blue
	all-mapped diff seq f/r	: black/grey
Changed Translate Sequence option to radio buttons
remove jsdoc, it is really not very useful anymore
Disable FASTA downloads under Safari (For now, see #412)
Use has functions instead of dojo properties to detect Safari with regards to issue #412
Pass the dojo/has module as argument to fix Issue #412
tweak comment in jbrowse.conf about includes
fixed navigateTo when generate-names not run
removed redudancy in callLocation
Made radio buttons inline with Search For text
Ability to set document.domain in the config files (see #440)
Merge commit '0517ccd19987'
Fix logic for adding document.domain via config and add a stub for the option in the jbrowse.conf file. Fixes #440
Rename the config variable to documentDomain and add a better example into the jbrowse.conf stub. Fixes #440
Align the translation frames by forcing the start to mod3 on the Sequence track. Fixes #435
use JBrowse/has for deciding when to disable FASTA saving button in feature detail popups (attn @cmdcolin)