Data files for test cases (see filenames for short description).
Reviews at http://codereview-netsyslab.appspot.com/24003/ and
http://codereview-netsyslab.appspot.com/21002/

A    test
A    test/data
A    test/data/chain_1000_nodes.totem
A    test/data/single_node_loop.totem
A    test/data/complete_graph_300_nodes.totem
A    test/data/single_node.totem
Changed vertices_count to vertex_count and edges_count to edge_count. Issue 25003
Fixing number of edges in chain data file

Review at http://codereview-netsyslab.appspot.com/21003/

M    data/chain_1000_nodes.totem
minor modifications to the thread and block configuration macros
Time improvements for script txt2totem.sh.
Review at http://codereview-netsyslab.appspot.com/25004/.

M    scripts/txt2totem.sh
Added a new module that contains a set of convenience kernels. Reviews at: http://codereview-netsyslab.appspot.com/25002
New common definitions: a simple stopwatch functionality. Reviews at: http://codereview-netsyslab.appspot.com/22004
Got rid of the get_time_ms. The functionality has been integrated with the stopwatch_* functions directly. Reviews at: http://codereview-netsyslab.appspot.com/22004
Added the tex document we have for the project. As of this commit, 571_proposal and 571_midterm are the same. 571_proposal is put here as a reference and there should not be any future work on it. 571_midterm will be the base file for the midterm report.
revert a bad commit for totem_main.c file
Worked on restructuring the document to strip out the Genome stuff. I added a number of todos that I think are priority to address for the report.
Initial tests for graph initialize.

Review at http://codereview-netsyslab.appspot.com/27001/

A    totem_helpers_unittest.cc
modified the kernel configuration macros to support 2D grid configurations. The user will only have to call KERNEL_CONFIGURE to set the kernel configuration parameters. Having 2D support enables us to have a number of threads that up to 512M
More work on the midterm report, mainly the abstract and the related work sections
PageRank first version (CPU and GPU).
Fixing mispelled words.

Review at http://codereview-netsyslab.appspot.com/30001/

M    totem_page_rank.cu
Initial version of BFS.
Reviews at: http://codereview-netsyslab.appspot.com/18002/

A    test/totem_bfs_unittest.cc
M    src/totem_graph.h
A    src/totem_bfs.cu
Change default allocation to pinned memory. Can be changed to pageable memory at compile time through MEMORY=PAGEABLE. Also changes to the make.defs file to enable openmp compilation. Review at: http://codereview-netsyslab.appspot.com/29001/
Added openmp support to the cpu version of page rank. Note that _OPENMP is defined if -fopenmp flag is passed to the compiler. Review at: http://codereview-netsyslab.appspot.com/32001/
Added a paragraph on the graph representation we are using