Moved generation code from CLI package to core.
Updated module dependencies, so that core is the entry point, instead of the CLI.
moved composite annotator creation to the annotator factory.
added an enumeration of the boolean features.
added commons-io to the core project.
added name helper for package names.
added package mapper.
added maven utils.
added package mapper to schema mapper.
added package lookup when resolving $refs
wired new builder pattern into clients.
updated package mapper to work on URIs instead of paths.
added a test focused on naming changes.
removed development notes.
removed fragments from URIs when mapping packages.