README updated.
Merge pull request #1 from izhbannikov/12345-bug-login

README updated.
Merge pull request #2 from izhbannikov/dev

README updated.
Merge pull request #3 from izhbannikov/dev

Fixed minor mistakes in README.
Merge pull request #4 from izhbannikov/dev

Dev
Merge pull request #5 from izhbannikov/dev

UserGuide.pdf and README.md
Merge pull request #6 from izhbannikov/dev

File Evaluation/README.md updated.
Merge pull request #7 from izhbannikov/dev

Makefile updated.
Merge pull request #8 from izhbannikov/dev

Evaluation scripts updated.
Merge pull request #9 from izhbannikov/dev

Many changes, cluster table is generate with another algorithm.
Merge pull request #10 from izhbannikov/dev

Even HMC data added.
Merge pull request #11 from izhbannikov/dev

Sammon's method is used now for multidimensional scaling.
Merge pull request #12 from izhbannikov/dev

Improvements on pairwise alignment
Merge pull request #13 from izhbannikov/dev

Supporting points removed from triangulation function.
Merge pull request #14 from izhbannikov/dev

Reference 'gold' gold.fa dataset added.
Merge pull request #15 from izhbannikov/dev

Minor updates.
Merge pull request #16 from izhbannikov/dev

User guide updated and some other minor improvements.
Evaluation folder removed, evaluation data was moved to data directory.
Merge pull request #17 from izhbannikov/dev

Evaluation folder removed, evaluation data was moved to data directory.
technical commit