Merge pull request #8 from mlund/master

Getting latest version - 06/02/2014
Merge pull request #9 from mlund/master

Pull from Mikael
Merge pull request #10 from mlund/master

Update: 25/02/2014
Minor updates in my playground scripts and main program.
Merge pull request #11 from mlund/master

Update: 06/03/2014
U(r) added to HydrophobicSASA energy; ~ to ! operator in some assertions
aam->pqr
More hydrophobic
Documentation; beta in textio
Added VMD SASA script
Documentation
cleanup; docs
Merge pull request #36 from mlund/develop

Develop merge
more cpp -> header transfers.
Merge pull request #12 from mlund/master

Update
Documentation; smeared charges in manybody
documentation
Update of manybody to sample less
doxygen
Merge branch 'develop' of https://github.com/mlund/faunus into develop