Adding bwa workflow
Removed old symlinks, working on data download process
Removed files
update
Working on a decider for EBI's GNOS
delete
Updated git ignore
Merge remote-tracking branch 'origin/feature/brian_bwa_pancan_gnos_download' into feature/brian_bwa_pancan_gnos_download
Merge remote-tracking branch 'origin/feature/brian_bwa_pancan_gnos_download' into feature/brian_bwa_pancan_gnos_download
delete
gitignore
Testing
Fix
Working on decider for EBI, now parsing file info
Todo list
Merge remote-tracking branch 'origin/feature/brian_bwa_pancan_gnos_download' into feature/brian_bwa_pancan_gnos_download
Added readme, worked on workflow to use BAM files as inputs, added sample data
Merge remote-tracking branch 'origin/feature/brian_bwa_pancan_gnos_download' into feature/brian_bwa_pancan_gnos_download
Adding info to README for the workflow
Adding memory settings, working on the steps of the workflow including a loop per bam, added placeholder for upload process.