Initial commit. Script based on the template blast script on http://braembl.org.au/content/ncbi-blast-rest
ncbiblast_lwp.pl renamed to braembl_blast.pl
braembl_blast updated to handle html error for parameter testing.
initial upload of macros.xml and wrapper.xml
initial upload of test data hla-dr15.faa
Updated braembl_blast.pl and wrapper.xml so that it works on galaxy
braembl_blast.pl: commented out features that are not useful in a galaxy environment \
macros.xml: update parameter definition to match the RESTful requirements
wrapper.xml: commented out features not supported by BRAEMBL and added features to look somewhat similar to the page provided on BRAEMBL
databases: the databases available on the RESTful interface
datatypes_conf.xml: the datatypes available on galaxy
Major update: tool now works with single sequence. braembl_blast.pl: RESTful and submission features activated. get_result updated to write files to specified output names; databases.xml: initial upload of defined BLAST databases; macros.xml: databases moved to databases.xml.  corrected bugs. unused features were removed; wrapper.xml: removed the feature for hidden advanced options, all options now are shown.
minor update; wrapper.xml renamed to interface.xml to avoid confusion with other (actual) wrapper scripts
minor updates to reenable the standard file naaming. braembl_blast.pl,
uncommented the section to use JOB_ID for filenames and commented out
the section using just the outfile value
Minor update to move to standard file naming. braembl_blast.pl: reverting to using the JOB_ID as the primary filename. interface.xml: reducing the number of outputs to just one
Merge branch '2.0' of barrine3.hpcu.uq.edu.au:packages/galaxy_barrine_blast/ into 2.0
minor update; interface.xml tool id updated to avoid interference with the old version
updating to use the wrapper script; added wrapper.sh; interface.xml: passing the values to wrapper.sh instead of directly to braembl_blast.pl, using bash as the interpreter
Minor update
wrapper.sh: fixed some bug with positional parameters, shift, and $*
minor update:
interface.xml: fixed the bug of wrong inputs to wrapper.sh
Wrapper.sh updated to use a proper multiple output framework
Minor update
wrapper.sh: testing a different name for the output filename (successfully)
Minor update
interface.xml: added force_history_refresh attribute to the tool tag
wrapper.sh: first integration of the multiple options with the actual script
minor update
braembl_blast.pl: most of functions that cannot be used or are not useful
Bug fix:
braembl_blast.pl: uncommented package import Data::Dumper which is needed by print_debug_message