add KmerCache class
Merge branch 'experimental' of github.com:gt1/libmaus into experimental
add methods addMateBaseScore and addMateCoordinate in BamAlignment
add clear method variant when set of all inserted keys is known
- refactoring
- output decoded coordinates in ReadEnds class ostream operator
- split LRU.hpp file
- add sparse LRU class and sparse LRU file container class
- add free list class with dynamic allocation
- generalisation of SimpleHashMap class
- refactoring
- add value designating deleted element in a hash set/map
add non sync simple hash map class supporting insertion and deletion
- make SimpleHashMapInsDel more generic
- add SimpleHashSetInsDel class
add missing scope operator
add parseReadNameTile variant returning tile, x and y in separate variables
return index of inserted element in SimpleHashMapInsDel
- add parseOptical method in ReadEndsBase
- fix missing initialisation in optical coordinate parsing (only relevant when re-initialising object)
use 4 bytes to store x and y coordinates of optical coordinates in ReadEnds serialisation
fix reference point for optical duplicate detection
add missing scope operator
add field initialisation
Merge branch 'experimental' of github.com:gt1/libmaus into experimental
- add template parameters in SimpleHashMapInsDel/SimpleHashSetInsDel
- add streaming duplicate marking class and support classes
clang fix
clang fix