show treatment file before control file
fix the narrowPeak file name
add --format BAMPE option
add --keep-dup option
fix typos
enhance keep-dup in filterdup and change defaults
move --keep-dup into the macro file and reuse is in filterdup and callpeak
Make --call-summits and —broad mutually exclusive
Merge branch 'master' of https://github.com/bgruening/galaxytools
rework the output logic as suppested by Tao Liu