New pdb parser class working.
Cleanup.
Adapted EK for new Pdb parser.
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Added tcl command to get parts from pdb file.
Added type resolution to pdb parser.
Added rescaling when reading parts from a pdb file.
Merge remote-tracking branch 'origin/master' into pdb_parser
Added setting charge from pdb file.
Added data file for pdb parser testcase.
Added lj interactions from pdb/itp files.
Some refactoring.
Added return value to readpdb.
Added return value to readpdb.
Documentation for the readpdb command.
Remove output from pdb_parser testcase.
Merge remote-tracking branch 'origin/master' into pdb_parser
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