scripts/beagle2Vcf.pl - update missing PL to 255 and add missing PL3 values (also 255)
Update glfMultiples to handle when the first glf is empty
glfMultiples - fix to work if all glfs are empty
glfMultiples - update test
glfMultiples - fromdos
VcfPileup- update to improve return codes
SNPCALL - Add check for file before creating .OK
increment development release
Bring in latest VerifyBamID (now a subtree)
Cleanup runcluster
increment development release
Test - Add missing expected results files
runcluster updates from Terry and update umake to write job files to a directory
Update runcluster and cleanup umake test expected results
Increment release_version for development release 1.12.5
new snpcall monitoring utility.
Merge in libStatGen v1.0.12
Merge in bamUtil v1.0.12
Merge branch 'master' of https://github.com/schelcj/gotcloud into schelcj-master
Merge branch 'schelcj-master'