Add and display staging path

refs #6248

Staging path will be used in future to store files being transferred
from one Space to another.
Make moving files more generic

refs #6248

Add functions to move files/folders to and from the storage service.
Moving to the storage service from the original location deposits them
in a staging area associated with the destination Space.  Moving from
the storage service to the final destination moves the file from the
destination Space's staging area to the destination path.  The staging
area is locally accessible to the storage service, which makes the move
to/from storage service functions much simpler than trying to move to
any protocol space.

Each protocol space implements these functions, and the parent Space
calls them as needed.  Several protocol spaces have similar
requirements, so helper functions were placed in the Space class for
moving locally (using os.rename) and rsync.

Update store_aip to use the new functions.
Staging path in default Space

refs #6248

Add staging path to default Space.  Only set the default transfer
source and AIP storage paths if they're unset.
Rsync copies folders

Recursive option added to rsync command to copy folders properly.  Execute
permissions left alone, as directories that don't have execute bit don't
display permissions.
Extract file works for directories

Extract file requests will now check the filesystem to see if that path
exists in the package.  If not, and the package can be extracted, it will
fallback to the previous behaviour of extracting a file with the given path
and returning that.
Fix moving folders locally

Bugs moving folders locally using os.rename or shutil.move, so changed to
always use move_rsync until properly fixed.
post_move_from_storage_service takes set parameters

refs #6248

post_move_from_storage_service now expects the staging path (path relative
to the staging area for that Space), destination_path (path relative to the
Space.path for that Space) and package (optional, the Package that was
moved).
Add migration

Add migration for staging_path Space addition.
Move extraction from a package to the model

Refactored extracting a file from a package to the model, and added a
dependency on atool so it can handle more file formats.  Also, escape the
relative paths coming from the URL.
Add link to download pointer files

refs #5716

Add link to pointer files to Packages table.  Add download pointer file
URL.  Refactor extract and download request code to pull out the
section that returns a file stream, for use with the pointer file
downloads.
Extract files using unar

Replace atool with unar - support for more formats and encodings.  Add
unar to the dependency list.
Added SWORD server space type.

refs #5980

Added SWORD server space type and creation of space by default.
rough work.
Roughed out deposit endpoints.
Prepping for deposit state endpoint.
Reworked async download.
Reworked SWORD state endpoint.
Minor fixes.
Moved sword logic to subdir.
Refactoring and cleanup.