Init plots for masmvali on new LIMS1884 sample.
Read coverage mean versus Genome contig coverage
purity research
more purity research
Purity with removing pairs and references
Add histogram purity plots and lowest purity inspection with BLAST.
Add metagenome coverage plots
Update commit log message from masmvali
Add old metagenome coverage line in plot
Add contig overhang text and updated masmvali code (seems to work on new data, but that does not have overhanging contigs)
Init user given assembly plot
Add N/A contig alignment and low purity alignment investigation.
Start counting kmers for chimerism detection
Further work on counting kmers. Can output tsv now of contig with kmer origin percentage
Investigated kmer composition some more. Turns out low purity contigs seem to mostly have false kmers.
Add kraken kmer origin counting
Finished LCA plot for Kraken
Investigate coverage distribution after filtering reads
Create README.md
Add coverage distribution check for uneven community