minor changes to options for CorrAlign
Added function to filter mlists
Merge branch 'master' of https://github.com/ZhuangLab/matlab-storm
Added a transpose option to change array orientation for ReadMasterMoleculeList
Minor fix to FilterMList
Removed debug statements in MatchFeducials
Merge branch 'master' of https://github.com/ZhuangLab/matlab-storm into JeffUpdate

Conflicts:
	GUIs/Library/STORMfinder/Analysis/ChromeWarps/MatchFeducials.m

fixed conflict in MatchFeducials
Fixed missing default parameter in ReadMasterMoleculeList
Added containers.Map object to CheckParameter
Handled merge conflict
Changes to presentation plot and uiopen
removed clear variables from matlabstorm_startup.  I want to be able to reset the matlabstorm paths without losing my workspace.
Added new functions ReadParsFile and WriteParsFile
changed spacing during debugging.
Added new fields float and int to CheckParameter