MFPT should be working.

Signed-off-by: Evan Senter <evansenter@gmail.com>
First pass at RNAeq, functions work, nothing wired.
Finishing klp_matrix integration for RNAeq, better verbose.
timers.h prototype macro implementation for RNAeq.
Everyone can benchmark! It's easy!
FFTmfpt
FFTeq works.
I hate getopt, it's so finicky.
FFTbor2D needs stuff specified via flags now.
First proposed version with final klp_matrix extraction.