Adjusted Uniprot for PEP8
Referenced Uniprot Parsing from .ini config files
added MongoDB location detection from servers.ini file
Moved Xml_Doctor to Utils and disententangled it from the exact applcation for the Reactome BioPax
Moved Xml_Doctor to Utils and disententangled it from the exact applcation for the Reactome BioPax
Added project_guidelines where all the major improvements are listed. All in the Restructured Text Format
Reactome import functional again. Added a simpler import interface.
Simplified Reactome importing behavior and excluded parser import from general Reactome inserter module import. ...

Externalized Reactome Import statements into a separate "Import_commander" module and tested it

Corrected name mismatches in the typeDec module
Renamed typeDec to get rid of previous refactoring left-overs
All the import instructions were exported to a commander file and the whole system functions well.
Minor_edits
README update
README update
README update
README update
Correction of logging behavior
Added simple IO Routines
Added AccessNode for indexation for X-reference acessing
Edited EMBL field and stabilized behavior of the whole class following the modification
Added PDB scanning
Remover AccessNodes since they were replication the Annotation Nodes.
Testing the new Insertion of the reference nodes over the Uniprot.
Added general search over AnnotNodes to retrieve True Nodes annotated with AnnotNodes containing specific information.
Merge pull request #2 from chiffa/refactoring-14.01

Refactoring 14.01