[FIX] Bug Fixes (See description)

Okay I really screwed up this release...

 - fix bug where module version wasn't being set properly, copyMod fails
 - fix bug where readonly module property was being set twice.
 - fix bug where if({null}) is true, and int cannot be null My bad
[Enhancements] Deployment enhancements

 - allow for classpath to be appended to when running.