extracted abundance
fixed coverage calculations
extracted HIPPIE feature
ongoing, but getting it working
version 1, first commit
rough notes, need tidying
added this to make it a module
made various small changes, added new options
was trying to fix missing values problem, trying different solution
working version, tested#
notes on usage of the new ocbio.extract code
fixed a word
removed some of the if verbose statements and pep8ified most of the code
first notes on Gene Ontology extraction
mostly done, but file created is too large to store, have to work on subset of proteins
working on new solution
debugged, works now
added functionality for gene ontology to protein pair parser
updated assembler for gene ontology
notebooks on gene ontology feature extraction and code