Increased stack size in compiler runtime
WINDUP-379: Overwrite prompt is ignored in non-interactive mode, and results in automatic deletion of the output folder
WINDUP-369: Be able to focus effort on specific jars in the ear or war
WINDUP-369: Reporting of the ignored files
Tweaked javadoc, and made a minor change to model naming
WINDUP-331: Fail gracefully on unreadable archive