Moved all csv files into new "data" subdirectory
Add rule rmd to Makefile to run rmd.mk. Update paths in rmd.mk to knit
R Markdown files in root directory.
Updated paths in lessons 01 to 04 to account for data files being moved to 'data' subdirectory. Created *.md files using 'knit' in RStudio.
Copied python example coding images from bc/novice/python/img and
updated *.Rmd and *.md files to reference new image location.
Updated html files for lessons 01 - 04 by running 'make preview' using
*.md files with fixed path to data files
Merge pull request #3 from jdblischak/update_makefile

Updating Rmd conversion process for using in new lesson-template
Putting commands to build R in the main Makefile.

This doesn't work: after installing knitr with:

~~~
install.packages("knitr")
install.packages("markdown")
~~~

the command `make preview` produces:

~~~
~/lessons/r-novice-inflammation: make preview
pandoc -s -t html \
       --template=_layouts/page \
       --filter=tools/filters/blockquote2div.py \
       --filter=tools/filters/id4glossary.py \
       -Vheader="$(cat _includes/header.html)" -Vbanner="$(cat _includes/banner.html)" -Vfooter="$(cat _includes/footer.html)" -Vjavascript="$(cat _includes/javascript.html)" \
       -o 00-first-timers.html 00-first-timers.md
Rscript -e "knitr::knit('$(basename 01-starting-with-data.Rmd)', output = '$(basename 01-starting-with-data.md)')"

processing file: 01-starting-with-data.Rmd
  |.                                                                |   2%
  ordinary text without R code

  |..                                                               |   4%
label: unnamed-chunk-1 (with options)
List of 1
 $ include: logi FALSE

Quitting from lines 7-9 (01-starting-with-data.Rmd)
Error in file(filename, "r", encoding = encoding) :
  cannot open the connection
Calls: <Anonymous> ... withCallingHandlers -> withVisible -> eval -> eval -> source -> file

Execution halted
make: *** [01-starting-with-data.md] Error 1
~~~
Adding link back to lesson template
Bringing titles into line with latest version of template
Source chunk-options.R from its new location in subdirectory tools.
Merge pull request #1 from jdblischak/fix-build

Source chunk-options.R from its new location in subdirectory tools.
Merge branch 'gh-pages' into consolidating-makefile
Replaced argument "pat" with "path" in list.files call
Merge pull request #4 from mlammens/gh-pages

Move data files to 'data' subdirectory and change references to these files in lessons files
Merge pull request #5 from gvwilson/consolidating-makefile

Putting commands to build R in the main Makefile.