Rearrange preferences and add simulation and launch condition preferences

This started off to add figure color controls.  It ended up adding all of the SimulationOptions to the preferences so that they persist from session to session.
![screen shot 2014-12-24 at 6 04 29 pm](https://cloud.githubusercontent.com/assets/879404/5551858/133cc464-8b98-11e4-9fe5-0c993dfaf06d.png)
![screen shot 2014-12-24 at 6 04 44 pm](https://cloud.githubusercontent.com/assets/879404/5551859/17146010-8b98-11e4-9633-35dc2a4f4ac9.png)
![screen shot 2014-12-24 at 6 04 52 pm](https://cloud.githubusercontent.com/assets/879404/5551860/18c04924-8b98-11e4-956c-b8bf7fb44923.png)
![screen shot 2014-12-24 at 6 04 59 pm](https://cloud.githubusercontent.com/assets/879404/5551861/1a734e6a-8b98-11e4-8e44-3cbc0f5bcd7f.png)
![screen shot 2014-12-24 at 6 05 09 pm](https://cloud.githubusercontent.com/assets/879404/5551863/1ccabf54-8b98-11e4-815a-4d147b4028a0.png)
![screen shot 2014-12-24 at 6 05 13 pm](https://cloud.githubusercontent.com/assets/879404/5551867/20c2b72e-8b98-11e4-82a0-31627fb4f8ed.png)
![screen shot 2014-12-24 at 6 05 18 pm](https://cloud.githubusercontent.com/assets/879404/5551868/22f069ba-8b98-11e4-8365-30894c94c78a.png)