Implemented UI for dup_remove_mvicuna and limited tool installation. Still need to finish tool installation and test.
Merge branch 'master' into irwin-taxon_filter
Exclude tools/mvicuna.py from testAllToolInstallers until fully implemented.
Finished dup_remove_mvicuna, including tool installation on linux and max, and unit test.
TestBmtagger now tests parser_... and main_..., not just partition_bmtagger.
Merge pull request #31 from broadinstitute/irwin-mvicuna

Irwin mvicuna
Required explicit specification of both files for paired-end reads in dup_remove_mvicuna and partition_bmtagger. Started defining interfaces for deplete_blastn.
Merge branch 'master' into irwin-taxon_filter
Finished defining interfaces for deplete_blastn*.
Implemented deplete_blastn_prep.
Merge pull request #32 from broadinstitute/irwin-taxon_filter_interfaces

Irwin taxon filter interfaces
Merge branches 'irwin-taxon_filter' and 'master' of github.com:broadinstitute/viral-ngs
Merge branch 'master' into irwin-taxon_filter
Implemented deplete_blastn and fix_mate_pair_info without testing.
Created TestCaseWithTmp and derived from it in all tests that setUp and tearDown tmpDir.
Debugged and added test for deplete_blastn.
Added TestFixMatePairInfo.
Renamed fix_mate_pair_info to purge_unmated; reordered input file.
Created util/read_utils.py; moved purge_unmated there.
Created test_read_utils; moved TestPurgeUnmated there.