CORE-5386 Removed CREATE EXTENSION from schema rewrite conversion.

The de user is not a super user.
CORE-5386 Fixed UUID conversions in schema rewrite.

Some IDs in some tables are not valid UUIDs.
Added a function that converts an id column for a given table to UUID, generating a new UUID if the current value is invalid.
Updated the conversions for tools, tasks, apps, file_parameters, parameters, parameter_groups, and validation_rules to use this function.
Updated the conversions for parameter_types and rule_type to remove invalid prefixes from their id values when converting to UUIDs.
Updated the conversion for workflow_io_maps to delete input and output mappings that no longer refer to existing file_parameters, which removes some invalid UUID values in these colums.
CORE-5386 Fixed syntax errors in schema conversion.

Fixed ADD COLUMN syntax error.
Fixed name of genome_reference table.
CORE-5386 Added param_order to parameter_values table.
CORE-5386 Bumped database version

to match the schema refactor conversion