updated template_MOD description
bugfix GATK variant calling : sample_config and change output from <NAME>.filter.snp.vcf to <NAME>_snp.flt.vcf
bugfix GATK variant calling : sample_config and change output from <NAME>.filter.snp.vcf to <NAME>_snp.flt.vcf
Merge branch 'master' into iss39ANNOVAR
iss39 working on html report for annovar
changes
bugfix variant calling, and html reporting for postcommands, iss39 annovar finalized