Cloned from aaleman
Removing extra line in license
Added Java version 1.7 to POM
pathipred added to pathiwaysANALYSIS.py; AnalysisWSServer toolName fix
pathiways analysis fixes
opencga-ws is now opencga-server
added results.js to variant analysis, opencga-server files updated
AnalysisWSServer dataPath can be from buckets or projects
JobAnalysisWSServer added ws for variant explorer
added variant_info on JobAnalysisWSServer, and variant.py filename fix
variant: Added new command line to variant.py
common and lib: now uses org.opencb.cellbase and org.opencb.commons dependecies
Removed old dependencies
removed variant-cli dependency
indexer: pythin script fixed
Merge branch 'develop' of github.com:opencb/opencga into develop
Pathiways Analysis result check pathways
Server: jersey updated to 2.4 and; ApplicationServer clas created to load web service resources
Merge branch 'develop' of github.com:opencb/opencga into develop
Major refactor done:
 * opencga-lib: packages storage and analysis have been promoted to independent jar libraries
 * copencga-common: now it's part of opencga-lib
 * pom.xml: configured