Fix settings.yml useage in Vagrantfile.
Added maven and svn.
Removed unused submodules
Add wget submodule to get an actual working version of maven that doesn't bork the java version.
Add refresh script to checkout, build and restart javapa
Fixed bug in javapa refresh option.
Merge pull request #1 from bostanio/master

Fix Settings File usage, add svn & mvn, add Refresh script