Updated Makefile, added a bit more Java UI

3 Different modules in NDK now:

1) PerformanceInterface : all of the math functions
2) Grapher : for graphing
3) Standalone: for experimental C++ executable

Java changes:

Further Package refactoring for UI classes
Added a Fragment for the MessagingBox
Added some more files to the ProjectFiles class
Some more OpenCL checking
Misc other changes