Switch hibernate dependency name

Before:
 * org/hibernate:hibernate:3.5.6-4510
After:
 * org.hibernate:hibernate-core:3.5.6-4510
Switch hibernate dependency name

Before:
 * org/hibernate:hibernate-search:3.1.1.GA
After:
 * org.hibernate:hibernate-search:3.1.1.GA
Switch hibernate dependency name

Before:
 * org/hibernate:hibernate-validator:3.1.0.GA
After:
 * org.hibernate:hibernate-validator:3.1.0.GA
Switch hibernate dependency name

Before:
 * hibernate:hibernate-jpa-2.0-api:1.0.0.Final
After:
 * org.hibernate.javax.persistence:hibernate-jpa-2.0-api:1.0.0.Final
Switch hibernate dependency name

Before:
 * org/hibernate:hibernate-tools:3.2.0.beta11
After:
 * org.hibernate:hibernate-tools:3.2.0.beta11
Switch freemarker dependency name

Before:
 * org/hibernate:freemarker:3.2.0.beta11
After:
 * freemarker:freemarker:2.3.8
Switch jtidy dependency

Before:
 * org/hibernate:jtidy:3.2.0.beta11
After:
 * org.hibernate:jtidy:r8-20060801
Switch lucene dependency groups
Fix slf4j dependency organizations
Fix perf4j dependency organizations
Fix ant dependency organizations
Use version number variables where available
Switch jakarta-oro dependency

Before:
 * jakarta-oro:jakarta-oro:2.0.8
After:
 * oro:oro:2.0.8
Fix testng dependency organizations
Fix guava-jdk5 dependency organizations
Fix reportng dependency organizations
Fix gui dependency organizations
Merge pull request #2144 from cneves/feature/makemovie_channeldefs

Passes channel configuration to Make_Movie (see #12036)
Update dev_4_4 submodules

Repository: openmicroscopy/openmicroscopy
Already up-to-date.

Repository: openmicroscopy/bioformats
Updating d853f51..741162c
Merged PRs (fast-forward):
  # PR 1046 sbesson 'Update version numbers to 4.4.11'
  # PR 1051 sbesson ' Add placeholder for 4.4.11 version'
  # PR 1044 hflynn 'Remove mention of BF 4 update site for Fiji'
  # PR 1039 hflynn 'Fix link to bitplane release notes (rebased onto dev_4_4)'
  # PR 1020 hflynn '4.4.11 docs fixes'
  # PR 907 ctrueden 'Tell Eclipse to ignore gmaven-plugin configuration'
  # PR 930 hflynn 'Using correct redirect for 4 download page'
  # PR 936 hflynn 'Fixing IDL links'
  # PR 879 hflynn 'Updating TILL Photonics website link (rebased onto dev_4_4)'

Repository: ome/scripts
Updating bef5c0c..6816f59
Merged PRs (fast-forward):
  # PR 67 cneves 'Allow passing extra channel rendering options to Make_Movie script (see ...'
  # PR 74 sbesson 'Fix scripts to comply with PEP8 1.5.0 (rebased onto dev_4_4)'
  # PR 65 sbesson 'Drop --use-mirrors from .travis.yml (rebased onto dev_4_4)'

Repository: openmicroscopy/ome-documentation
Updating ef59469..21d2437
Merged PRs (fast-forward):
  # PR 732 hflynn 'Remove webstart limitation 4.4.11'
  # PR 668 hflynn 'Always link to latest 4 download page'
  # PR 662 hflynn 'Making 4.4 status as maintenance version clear'
  # PR 648 sbesson 'Drop --use-mirrors from .travis.yml (rebased onto dev_4_4)'
  # PR 641 hflynn 'Updating 4.4.x Demo server unavailable now'
  # PR 635 sbesson 'Document latest changes to the Homebrew OMERO formula'
  # PR 631 hflynn 'Changing Windows Ice download link to 3.4'

Generated by OMERO-4.4-latest-submods#275 (http://ci.openmicroscopy.org/job/OMERO-4.4-latest-submods/275/)
Merge pull request #2275 from cneves/feature/fullviewer_field_selector

Simple well field selection on full viewer