Commit made by the Bioconductor Git-SVN bridge.

Consists of 1 commit.

Commit information:

SVN Revision number: 97495
Commit message:
Starting with GenomicRanges 1.19.21, findOverlaps() does not sort the returned
Hits object by query *and* subject hit, only by query hit. Unfortunately, the
unit test for annotate_assembly() relies on the old behavior and is now broken.
So I modified annotate_assembly() to explicitely sort by query and subject hit
the Hits object returned by findOverlaps(). This fixes the broken unit test.

Committed by hpages@fhcrc.org
Committed at: 2014-12-09T07:41:59.952126Z