to merge
Added genotype aligner step + Other minor changes
corrected typo in
make output of liftover more clear
removed root. It should be in an exra file
removed root. It should be an extra file
removed root. It should be an extra worksheet
removed debugging output
changing the location of resulted files in order to compy with rest imputation workflows
removed $outputFolderChr
Merge branch 'master' of https://github.com/molgenis/molgenis-pipelines
small bugfix in PrepareStudy protocol
Update on walltimes
Merge pull request #92 from DashaZhernakova/master

added a pipeline to get mapping statistics and GC content from RNA-seq
Changes and bugfixes to LifeLines update genotype data pipeline
Merge branch 'master' of https://github.com/molgenis/molgenis-pipelines
Added new protocol plus some bugfixes
Merge pull request #93 from freerkvandijk/master

Updates and bugfixes Lifelines genotype pipeline
Update on walltime CreatePlinkFiles protocol
Added sample spliting in imputation