Disable assessment tests

Currently, the assessment tests run fine when run by themselves but they crash when run as the test suite as a whole. This is not critical right now so we are disabling assessment tests in master, this can be worked out in another branch.

Signed-off-by: Don Naegely <naegelyd@gmail.com>
Fix cohort sample links

Signed-off-by: Don Naegely <naegelyd@gmail.com>
Chain show call when presenting an error

Signed-off-by: Don Naegely <naegelyd@gmail.com>
Merge pull request #235 from cbmi/issue-205

Fix cohort popover sample links
Only truncate once before updating frequencies

This fixes a bug where we were only seeing the frequencies being updated for the last cohort in the list. This was a result of the placement of the truncate command. Previously, the truncation happened every loop iteration. Now, it happens before the loop starts.

Signed-off-by: Don Naegely <naegelyd@gmail.com>
Sort genes by effect impact in gene rank command

This also updates the test to be more general with regard to checking
that scores were added.

Signed-off-by: Don Naegely <naegelyd@gmail.com>
Merge pull request #243 from cbmi/issue-238

Only truncate once before updating frequencies
Merge pull request #244 from cbmi/issue-236

Sort genes by effect impact in gene rank command
Create test for allele frequency calculation

Signed-off-by: Ryan O'Hara <oharar@email.chop.edu>
Merge pull request #246 from ryanjohara/allele-freq-test

Create test for allele frequency calculation
Fixed Issue #125 puppet step to add iptable rule

Signed-off-by: Sheik Hassan <solergiga@yahoo.com>