add parser for decimal numbers
add sam file decoder and support methods
add missing files after SAM decoder import
reorder initialisation
add missing case in unsigned number parsing
remove typename
remove default template arguments
fix parsing of sam cigar string when string is undefined
consider query sequence as undefined if empty and then do not check the cigar string
- improve error messages in SAM parsing
- do not check cigar string when query sequence is undefined in SAM input
- avoid redundant query name check
restore test for line buffer
add sam decoder test program
add checkAlignment variant in BamAlignment performing header based checks
add dl library reference for linking sam decoder test program
add fixed length unsigned integer class
- fixes for unsigned integer class
- more tests for unsigned integer class
extend tests to 128 bits
remove unused arithmetic coding code
- add check for nettle library
- add methods in md5 class
change order for md5 digest to UnsignedInteger conversion to reproduce hex string