Actually just had to put #qubitElements back in. Works!

- Not with fancy simulation though.
- Deleted #qubitElements accidentally, found it, no worries.
- Made new lines in visualizer.js in order to see it better
- Also had to take one var out of $(document).ready().
About globals and options for them
Positions $qubitElements in the right place

- Methodology may not be ideal
Cleans up some comments
Feature/issue idea, refocus cursor after "Evaluate"