Move FAQ into main doc.
increase version to 1.6
pragma: no cover
set version to 1.7dev
fix: find alignment even when neither stop_in_ref nor stop_in_query are set
Implement anchored 3' adapters.

As requested in issue #81: May be useful if overlapping paired-end reads
have been merged.
Fix link to thesis
Typo
Merge pull request #8 from frederic-mahe/patch-1

Typo
test for compare_suffixes
Make wildcard1/2 attributes and rename
Rename C-level Aligner.reference attribute to _reference.

Avoids name clash with Python-level reference property and allows us to
simplify the constructor a bit.
Support IUPAC nucleotide codes (wildcards).
Rename Adapter.match => Adapter.match_to
More accurate initial values for best match
Refactor alignment algorithm slightly. Add min_overlap parameter to Aligner.

This changes the result of the alignment in rare cases since the minimum
overlap is now checked while aligning, not afterwards.
Add missing test files for the new anchored back adapter type
Require Cython if .c files are out of date
To do
Reorder help