Started new branch to examine differences in mean and shape of reaction norm for each transcript between colonies, following method in Murren et al 2014 AmNat
Finally figured out how to use .Rmd files with ESS by using [polymode](https://github.com/vitoshka/polymode).

With this change, can work directly with .Rmd file and removed .R file
Minor changes
Merge branch 'murren' of https://github.com/johnstantongeddes/ApTranscriptome