Modufy gsmi to read the -c and -k options - Task ID#5643
-c  config folder
-k keep temporary files
Merge branch 'develop' of https://github.com/ruchidesai/research-subject-mapper into develop

Conflicts:
	bin/generate_subject_map_input.py
	config-example-gsm-input/setup.json
Merge commit '2fc341ece156ba3b57a8ebfca4c71eebd1116442' into develop