Initial commit
Adding a new workflow to share with DKFZ for PanCancer variant calling.
Added a README
Renamed
Working on shared workflow with DKFZ, does not work yet
This compiles but is far from complete.  Michale and I have the basics
Adding bwa workflow
Removed old symlinks, working on data download process
Removed files
update
Working on a decider for EBI's GNOS
delete
Updated git ignore
Merge remote-tracking branch 'origin/feature/brian_bwa_pancan_gnos_download' into feature/brian_bwa_pancan_gnos_download
Merge remote-tracking branch 'origin/feature/brian_bwa_pancan_gnos_download' into feature/brian_bwa_pancan_gnos_download
delete
gitignore
Testing
Fix
Working on decider for EBI, now parsing file info