pigreporter added to aproximateAND and featureCheck
pig reporter counters fixed when null
deprecated chrum workflow xml deleted
Pig status reporter: counting contributors on input and output, init counters during object creating;
workflow.xml properties
bugfix
bugfix
disambiguation author worfklow - auxiliary seq files cleaning
cleaning module, fixed some issues reported by sonar
cleaning in packages
fixed some issues reported by Sonar
cleaning pig scripts
fixed some issues reported by Sonar
parsing argument using JCommander in EXTRACT_CONTRIB_GIVENDATA
EXTRACT_CONTRIB_GIVEN.. refactoring
cosmetic
change MatchableEntity contents formatting
formatting fix
make raw citation text optional
StringTools - trim after normalizations because of trailing dots
Merge pull request #234 from pdendek/master

Changes is bw2.proto and associated