better command summary formatting
test pileup flatmap two rdds
bump scripts/guacamole heap size 2 -> 4gb
bump length of truncated loci summarization 100 -> 500 chars
support capping the number of genotypes to output. collect genotypes 1 partition at a time when outputting to stdout.
add alternate union-based window task flatmap implementation
add commented-out debugger options to scripts/guacamole-demeter
remove println which dumps map to cmdline
Merge pull request #89 from hammerlab/clean-delayed-messages

Remove println which dumps map to cmdline
fix broken two-rdd pileup flatmap unit test
add vendor quality check information to read and filter by default
remove demeter-specific scripts
Merge pull request #91 from hammerlab/failedvendorquality

Add vendor quality check information to read and filter by default
Merge pull request #90 from hammerlab/minor-tweaks

Minor tweaks
start somatic copycat caller
add spark mllib dependency
changes to be compatable with Spark 1.0 (although we are not currently running at that version)
change pileup flatmap in distributed util to call functions on contig, locus, pileup triples instead of just pileups
Add somatic trainable variant caller (renamed from somatic copycat caller)
working on somatic trainable caller