more weird things removed
last weird file removed
Default method to control FDR in connectome-wide testing is now vanilla BH.
The RESAMPLE_VOL brick now uses PSOM_STRUCT_DEFAULTS to deal with defaults.
Merge branch 'master' of https://github.com/simexp/niak
change a compatibility problem: the right way to specify the ctrl char ^M whas char(13)
now the conversion goes perfectly for mac and linux users csv
A bunch of changes to support a user-specified template. Not tested yet, but should fix #23.
Bug fix: when regions are absent from the functional brain mask, niak_brick_merge_part was crashing.
Fix a warning, and improved documentation.
Bug fix for the support of user-specified template files.
Fixed a warning.
Bug fix for the support of user-specified template files.
New feature: the connectome pipeline now supports a mask that is not in the same space as the input data (resampling is performed at the begining of the pipeline).
Changes in NIAK_TEST_ALL to use custom low-res template, to decrease the execution time of the tests.
The GLM-FIR and GLM-connectome pipelines now resample the input masks at the resolution/FOV of the input processed fMRI time series.
Merge branch 'issue23'. Close #23.
Small warning fix, and update of the documentation.
The template files are now explicitely an input of the T1 preprocessing brick.
Got mixed up between the symmetric and asymmetric versions of the template NIAK_TEST_ALL.
Big change in the T1-EPI coregistration: (1) it is now based on a normalized mutual information (rather than mutual info as before); (2) no correction to a zero mean is applied to the volumes anymore (because it's not necessary anymore, before it was to prevent instabilities in the mutual info criterion; (3) the last step of registration has been suppressed. A simplex of 1 mm on a volume that is typically 3 mm isotropic does not make sense.