readme: fixed reference to docs
converting to local
converting
otu_caller: moved to local
remove_primers: added --output option
util: moved functions to Submitter in otu_caller
test: moved tests to otu_caller test
otu caller: minor fix
combine_fasta: to remove cat command
seq table: now use sequence ids
open ref: integrated into reference mapping
otu caller: fixed to exec check
intersect: now just checks
Merge pull request #30 from swo/master

Local running